Comment by koeng

I'm a synthetic biologist! And I think a big problem is physically executing biology programs.

I've been working on building a programming method for biology labs. Basically, it is a dynamic execution environment using lua that can have full rewind-ability (for complete execution tracing) and pausing - you can execute some code then wait a week or so to continue execution. The idea is you can have a dynamic environment for executing biology experiments where the route changes on the basis of outcomes - something I haven't really seen anywhere else. Then I focused a bit on the pedagogy of LLMs so that you can ask an LLM to generate a protocol, and then when you execute it and get unexpected results, it can automatically debug its own protocol using a code sandbox.

It all sounds decent in theory but the difference is I actually implemented it and ran a real biology experiment with it (albeit a simple one that I knew wouldn't work)

Demo here: https://github.com/koeng101/autodemo (probably watch the video)