Comment by jedwhite

Claude Code supports a set of flags to control behaviour such as permissions, and both `--permission-mode bypassPermissions` and `--dangerously-skip-permissions` are examples of those.

The claude-run helper supports passing in those flags supported by Claude Code itself that are relevant to a shell-scripting like context.

It also adds a couple of convenience flags (`--aws`, `--azure`, `--vercel`, `--vertex` for cloud API key use).