Comment by klodolph

> you are doing something quite unnatural

It is equally unnatural to form kana in your head when thinking about how to say something! Or, it’s unnatural to think about whether a verb is godan or ichidan when speaking, it’s unnatural to think about what particles are, etc.

You get an explanation for a concept and you internalize it. The explanation is a framework for you to internalize the concept, and once the concept is internalized, you no longer need it. The explanations are still useful, like romaji is still useful. None of the explanations are necessary, some are useful.

Maybe you get a few different partially wrong explanations of what the “wa” particle means before you internalize it. You’re not getting damaged by those explanations, they’re Wittgenstein’s ladder. (Well, maybe you got some bad explanations, but even the good explanations are wrong.)

You throw a bunch of different explanations at different students, combine it with practice and lots of examples, and eventually it sticks.

> which in this example is not actually even the same consonant

By that standard, the “t” in “butter” is not the same consonant as the “t” in “tap” (try it!)

People are really good at understanding and learning phonology and can really internalize it and understand it on an intuitive level, even if they can’t explain the rules for it. If you’re a native English speaker, you accept that there’s a “t” in “butter” and a “t” in “tap” even though they are not the same sounds (phones). That’s because they are the same phonemes.

Romaji is an effective way of writing down Japanese phonemes.