Comment by sameenkarim

Yes, we handle this both in the CLI and server using git rebase --onto

  git rebase --onto <new_commit_sha_generated_by_squash> <original_commit_sha_from_tip_of_merged_branch> <branch_name>

So for ex in this scenario:

  PR1: main <- A, B              (branch1)
  PR2: main <- A, B, C, D        (branch2)
  PR3: main <- A, B, C, D, E, F  (branch3)

When PR 1 and 2 are squash merged, main now looks like:

  S1 (squash of A+B), S2 (squash of C+D)

Then we run the following:

  git rebase --onto S2 D branch3

Which rewrites branch3 to:

  S1, S2, E, F

This operation moves the unique commits from the unmerged branch and replays them on top of the newly squashed commits on the base branch, avoiding any merge conflicts.